Publications

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(2018). Validation of Plasma Biomarker Candidates for the Prediction of eGFR Decline in Patients With Type 2 Diabetes.
Diabetes care, 1-8, https://doi.org/10.2337/dc18-0532.

Project

(2018). Validation of systems biology derived molecular markers of renal donor organ status associated with long term allograft function.
Scientific reports, (8), 1, 6974, https://doi.org/10.1038/s41598-018-25163-8.

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(2018). Endogenous factors and mechanisms of renoprotection and renal repair.
European journal of clinical investigation, (48), 5, e12914, https://doi.org/10.1111/eci.12914.

Project Project

(2017). Proteomic-Biostatistic Integrated Approach for Finding the Underlying Molecular Determinants of Hypertension in Human Plasma.
Hypertension, (70), 2, 412–419, https://doi.org/10.1161/HYPERTENSIONAHA.116.08906.

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(2017). Systems Biology-Derived Biomarkers to Predict Progression of Renal Function Decline in Type 2 Diabetes.
Diabetes care, (40), 3, 391–397, https://doi.org/10.2337/dc16-2202.

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(2017). Positioning of Tacrolimus for the Treatment of Diabetic Nephropathy Based on Computational Network Analysis.
PloS one, (12), 1, e0169518, https://doi.org/10.1371/journal.pone.0169518.

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(2016). Validation of a protein panel for the noninvasive detection of recurrent non-muscle invasive bladder cancer.
Biomarkers, (22), 7, 674–681, https://doi.org/10.1080/1354750X.2016.1276628.

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(2016). Predictive Biomarkers for Linking Disease Pathology and Drug Effect.
Current pharmaceutical design, (23), 1, 29–54, https://doi.org/10.2174/1381612822666161006153639.

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(2016). Vascular endothelial growth factor A as predictive marker for mTOR inhibition in relapsing high-grade serous ovarian cancer.
BMC systems biology, (10), 33.

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(2016). Metallothioneins and renal ageing.
Nephrology, dialysis, transplantation, (31), 9, 1444–52, https://doi.org/10.1093/ndt/gfv451.

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(2015). Renal microRNA- and RNA-profiles in progressive chronic kidney disease.
European journal of clinical investigation, (46), 3, 213–26, https://doi.org/10.1111/eci.12585.

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(2015). Disease map-based biomarker selection and pre-validation for bladder cancer diagnostic.
Biomarkers, (20), 5, 328–337, https://doi.org/10.3109/1354750X.2015.1068867.

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(2015). Molecular disease presentation in diabetic nephropathy.
Nephrology, dialysis, transplantation, (30 Suppl 4), iv17–25, https://doi.org/10.1093/ndt/gfv267.

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(2015). Drugs meeting the molecular basis of diabetic kidney disease: bridging from molecular mechanism to personalized medicine.
Nephrology, dialysis, transplantation, (30 Suppl 4), iv105–112, https://doi.org/10.1093/ndt/gfv210.

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(2015). A panel of novel biomarkers representing different disease pathways improves prediction of renal function decline in type 2 diabetes.
PloS one, (10), 5, e0120995, https://doi.org/10.1371/journal.pone.0120995.

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(2015). Protein interactome of muscle invasive bladder cancer.
PloS one, (10), 1, e0116404, https://doi.org/10.1371/journal.pone.0116404.

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(2014). A 3-biomarker-panel predicts renal outcome in patients with proteinuric renal diseases.
BMC Med Genomics, (7), 75, https://doi.org/10.1186/s12920-014-0075-8.

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(2014). From molecular signatures to predictive biomarkers: modeling disease pathophysiology and drug mechanism of action.
Frontiers in cell and developmental biology, (2), 37, https://doi.org/10.3389/fcell.2014.00037.

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(2014). Mass spectrometric-bioinformatic identification of a protein subset that characterizes the cellular activity of anticancer peptides.
Journal of Proteome Research, (13), 11, 5250–5261, https://doi.org/10.1021/pr500510v.

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(2014). Molecular pathogenesis of post-transplant acute kidney injury: assessment of whole-genome mRNA and miRNA profiles.
PloS one, (9), 8, e104164, https://doi.org/10.1371/journal.pone.0104164.

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(2014). Functional molecular units for guiding biomarker panel design.
Methods in molecular biology, (1159), 12, 109–33, https://doi.org/10.1007/978-1-4939-0709-0_7.

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(2014). Proteome-based systems biology analysis of the diabetic mouse aorta reveals major changes in fatty acid biosynthesis as potential hallmark in diabetes mellitus-associated vascular disease.
Circulation. Cardiovascular genetics, (7), 2, 161–70, https://doi.org/10.1161/CIRCGENETICS.113.000196.

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(2013). Using information content for expanding human protein coding gene interaction networks.
J Comput Sci Syst Biol, (6), 073–082.

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(2013). miRNA profiling discriminates types of rejection and injury in human renal allografts.
Transplantation, (95), 6, 835–41, https://doi.org/10.1097/TP.0b013e318280b385.

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(2013). Molecular models of the cardiorenal syndrome.
Electrophoresis, (34), 11, 1649–1656, https://doi.org/10.1002/elps.201200642.

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(2012). Evaluation of the Zucker diabetic fatty (ZDF) rat as a model for human disease based on urinary peptidomic profiles.
PloS one, (7), 12, e51334, https://doi.org/10.1371/journal.pone.0051334.

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(2012). Increased renal versican expression is associated with progression of chronic kidney disease.
PloS one, (7), 9, e44891, https://doi.org/10.1371/journal.pone.0044891.

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(2012). Data Graphs for Linking Clinical Phenotype and Molecular Feature Space.
International Journal of Systems Biology and Biomedical Technologies, (1), 1, 11–25, https://doi.org/10.4018/ijsbbt.2012010102.

Project Project

(2012). Molecular Pathways and Crosstalk Characterizing the Cardiorenal Syndrome.
OMICS, (16), 3, 105–112, https://doi.org/10.1089/omi.2011.0121.

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(2011). In-silico human genomics with GeneCards.
Human genomics, (5), 6, 709–17, https://doi.org/10.1186/1479-7364-5-6-709.

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(2011). Linking molecular feature space and disease terms for the immunosuppressive drug rapamycin.
Molecular bioSystems, (7), 10, 2863–2871, https://doi.org/10.1039/c1mb05187c.

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(2011). Mapping of molecular pathways, biomarkers and drug targets for diabetic nephropathy.
Proteomics. Clinical applications, (5), 5-6, 354–66, https://doi.org/10.1002/prca.201000136.

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(2011). Recurrence-free survival in prostate cancer is related to increased stromal TRAIL expression.
Cancer, (117), 6, 1172–1182, https://doi.org/10.1002/cncr.25504.

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(2011). Mycophenolate Mofetil Associated Molecular Profiles and Diseases.
J Comput Sci Syst Biol, (4), 1, 001–006, https://doi.org/10.4172/jcsb.1000068.

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(2011). Computational analysis workflows for Omics data interpretation.
Methods in molecular biology, (719), 1, 379–97, https://doi.org/10.1007/978-1-61779-027-0_17.

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(2011). Data and knowledge management in cross-Omics research projects.
Methods in molecular biology, (719), 97–111, https://doi.org/10.1007/978-1-61779-027-0_4.

(2011). Computational Reconstruction of Protein Interaction Networks.
in Applied Statistics for Network Biology: Methods in Systems Biology, (1), 155–180, https://doi.org/10.1002/9783527638079.ch8.

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(2010). Integrative bioinformatics analysis of proteins associated with the cardiorenal syndrome.
International journal of nephrology, (2011), 809378, https://doi.org/10.4061/2011/809378.

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(2010). Synthetic lethal hubs associated with vincristine resistant neuroblastoma.
Molecular BioSystems, (7), 1, 200–14, https://doi.org/10.1039/c0mb00082e.

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(2010). Adaptive trimmed t-statistics for identifying predominantly high expression in a microarray experiment.
Statistics in Medicine, (30), 1, 52–61, https://doi.org/10.1002/sim.4093.

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(2010). Molecular biomarker candidates of acute kidney injury in zero-hour renal transplant needle biopsies.
Transplant International, (24), 2, 143–149, https://doi.org/10.1111/j.1432-2277.2010.01162.x.

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(2010). Steroid pretreatment of organ donors to prevent postischemic renal allograft failure: a randomized, controlled trial.
Annals of internal medicine, (153), 4, 222–30, https://doi.org/10.7326/0003-4819-153-4-201008170-00003.

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(2010). Linking transcriptomic and proteomic data on the level of protein interaction networks.
Electrophoresis, (31), 11, 1780–1789, https://doi.org/10.1002/elps.200900775.

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(2010). Natural Immunity Enhances the Activity of a DR5 Agonistic Antibody and Carboplatin in the Treatment of Ovarian Cancer.
Molecular Cancer Therapeutics, (9), 4, 1007–1018, https://doi.org/10.1158/1535-7163.MCT-09-0933.

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(2010). The role of c-FLIPL in ovarian cancer: Chaperoning tumor cells from immunosurveillance and increasing their invasive potential.
Gynecologic Oncology, (117), 3, 451–459, https://doi.org/10.1016/j.ygyno.2010.02.024.

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(2010). Impaired metabolism in donor kidney grafts after steroid pretreatment.
Transplant International, (23), 8, 796–804, https://doi.org/10.1111/j.1432-2277.2010.01053.x.

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(2010). Systems biology: Opening new avenues in clinical research.
Nephrology Dialysis Transplantation, (25), 4, 1015–1018, https://doi.org/10.1093/ndt/gfq033.

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(2009). Biomarkers in renal transplantation ischemia reperfusion injury.
Transplantation, (88), 3 Suppl, S14–S19, https://doi.org/10.1097/TP.0b013e3181af65b5.

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(2009). Biocompatibility of peritoneal dialysis solutions determined by genomics of human leucocytes: a cross-over study.
NDT plus, (2), 6, 510–2, https://doi.org/10.1093/ndtplus/sfp129.

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(2009). Neuropilin-1 and neuropilin-2 are differentially expressed in human proteinuric nephropathies and cytokine-stimulated proximal tubular cells.
Laboratory Investigation, (89), 11, 1304–1316, https://doi.org/10.1038/labinvest.2009.96.

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(2009). A dependency graph approach for the analysis of differential gene expression profiles.
Molecular bioSystems, (5), 12, 1720–31, https://doi.org/10.1039/b903109j.

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(2009). Microarray and bioinformatics analysis of gene expression in experimental membranous nephropathy.
Nephron - Experimental Nephrology, (112), 2, 43–58, https://doi.org/10.1159/000213505.

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(2009). Histogenomics: association of gene expression patterns with histological parameters in kidney biopsies.
Transplantation, (87), 2, 290–5, https://doi.org/10.1097/TP.0b013e318191b4c0.

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(2009). Hypoxia response and VEGF-A expression in human proximal tubular epithelial cells in stable and progressive renal disease.
Laboratory investigation, (89), 3, 337–46, https://doi.org/10.1038/labinvest.2008.158.

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(2008). Molecular predictors for anaemia after kidney transplantation.
Nephrology Dialysis Transplantation, (24), 3, 1015–1023, https://doi.org/10.1093/ndt/gfn683.

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(2008). Biocompatibility of haemodialysis membranes determined by gene expression of human leucocytes: A crossover study.
European Journal of Clinical Investigation, (38), 12, 918–924, https://doi.org/10.1111/j.1365-2362.2008.02050.x.

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(2008). Bortezomib-induced survival signals and genes in human proximal tubular cells.
The Journal of pharmacology and experimental therapeutics, (327), 3, 645–56, https://doi.org/10.1124/jpet.108.142604.

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(2008). The surface properties of nanocrystalline diamond and nanoparticulate diamond powder and their suitability as cell growth support surfaces.
Biomaterials, (29), 32, 4275–4284, https://doi.org/10.1016/j.biomaterials.2008.07.023.

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(2008). Present status at the Vienna Transplantation Center after four thousand renal transplantations.
Clinical transplants, 69–80.

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(2008). Markers of cellular senescence in zero hour biopsies predict outcome in renal transplantation.
Aging cell, (7), 4, 491–7.

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(2008). Biomarker candidates for cardiovascular disease and bone metabolism disorders in chronic kidney disease: A systems biology perspective.
Journal of Cellular and Molecular Medicine, (12), 4, 1177–1187, https://doi.org/10.1111/j.1582-4934.2008.00280.x.

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(2008). Analysis and prediction of protective continuous B-cell epitopes on pathogen proteins.
Immunome Research, (4), 1, 1–17, https://doi.org/10.1186/1745-7580-4-1.

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(2008). Linking the ovarian cancer transcriptome and immunome.
BMC systems biology, (2), 2, https://doi.org/10.1186/1752-0509-2-2.

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(2007). Influence of microvascular endothelial cells on transcriptional regulation of proximal tubular epithelial cells.
American journal of physiology. Cell physiology, (294), 2, C543–54, https://doi.org/10.1152/ajpcell.00307.2007.

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(2007). In vitro - Transcriptional response of polymorphonuclear leukocytes following contact with different antigens.
European Journal of Clinical Investigation, (37), 11, 860–869, https://doi.org/10.1111/j.1365-2362.2007.01872.x.

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(2007). Characterization of protein-interaction networks in tumors.
BMC bioinformatics, (8), 224, https://doi.org/10.1186/1471-2105-8-224.

Project Project

(2007). Gene-expression profiles and age of donor kidney biopsies obtained before transplantation distinguish medium term graft function.
Transplantation, (83), 8, 1048–54.

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(2006). Gene expression profiles of human proximal tubular epithelial cells in proteinuric nephropathies.
Kidney international, (71), 4, 325–35, https://doi.org/10.1038/sj.ki.5002043.

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(2006). Gene expression and biomarkers in renal transplant ischemia reperfusion injury.
Transplant International, (20), 1, 2–11, https://doi.org/10.1111/j.1432-2277.2006.00376.x.

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(2006). Protein biomarkers associated with acute renal failure and chronic kidney disease.
European journal of clinical investigation, (36), 11, 753–763, https://doi.org/10.1111/j.1365-2362.2006.01729.x.

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(2006). Transforming omics data into context: bioinformatics on genomics and proteomics raw data.
Electrophoresis, (27), 13, 2659–75, https://doi.org/10.1002/elps.200600064.

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(2006). Molecular signature of mice T lymphocytes following tolerance induction by allogeneic BMT and CD40-CD40L costimulation blockade.
Transplant International, (19), 2, 146–157, https://doi.org/10.1111/j.1432-2277.2005.00241.x.

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(2006). Identification of over-represented combinations of transcription factor binding sites in sets of co-expressed genes.
Advances in Bioinformatics and Computational Biology, (3), 247–56.

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(2005). Transcriptional response in the unaffected kidney after contralateral hydronephrosis or nephrectomy.
Kidney international, (68), 6, 2497–507, https://doi.org/10.1111/j.1523-1755.2005.00725.x.

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(2005). Effect of tissue fixatives on telomere length determination by quantitative PCR.
Mechanisms of Ageing and Development, (126), 12, 1331–1333, https://doi.org/10.1016/j.mad.2005.08.003.

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(2005). Detection of coregulation in differential gene expression profiles.
Bio Systems, (82), 3, 235–47, https://doi.org/10.1016/j.biosystems.2005.08.001.

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(2004). Alterations in gene expression in cadaveric vs. live donor kidneys suggest impaired tubular counterbalance of oxidative stress at implantation.
American Journal of Transplantation, (4), 10, 1595–1604, https://doi.org/10.1111/j.1600-6143.2004.00554.x.

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(2004). Genome-wide gene-expression patterns of donor kidney biopsies distinguish primary allograft function.
Laboratory investigation, (84), 3, 353–61.

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(2003). Testing for the D zygosity with three different methods revealed altered Rhesus boxes and a new weak D type.
Transfusion, (43), 3, 335–339, https://doi.org/10.1046/j.1537-2995.2003.00313.x.

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(2001). RHD sequencing: A new tool for decision making on transfusion therapy and provision of Rh prophylaxis.
Transfusion Medicine, (11), 5, 383–388, https://doi.org/10.1046/j.1365-3148.2001.00327.x.

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