Skills

Skills

Skills

Data mining - Exploratory data analysis - Data modeling - Statistical inference - Machine learning - Data visualization and communication - Scientific writing

Industry knowledge

Bioinformatics - Life sciences - Biotechnology - Genomics - Molecular biology - Biobanking

Disease areas of interest

Nephrology - Cardiology - Oncology

Tools and Technologies

R - SQL - HTML - CSS - LaTeX - Cytoscape

Commonly used R packages

Data wrangling

tidyverse (tidyr - dplyr - readr - stringr - forcats - tibble - purrr) - readxl - widyr - rvest - broom - DT - htmltab - jsonlite - mice - reshape2

Statistical analysis and machine learning

caret - caretEnsembl - fdrtool - finalfit - glmnet - multtest - NBClust - outliers - randomForest - ranger - survival - survminer

Data visualization

ggplot2 - plotly - gganimate - ggalluvial - alluvial - formattable - cowplot - corrgram - corrplot - circlize - UpSetR - ggridges - waffle - leaflet - ComplexHeatmap - hiver - memery - plotROC

Communication and reporting

R markdown - flexdashboard - shiny - kableExtra - stargazer

Bioinformatics analyses

biomaRt - chromoMap - DESeq - DOSE - gCMAP - GEOquery - homologene - KEGGgraph - KEGGREST - limma - pathview - rentrez - sizepower - toppGO

Recent Publications

More Publications

Skills

. Validation of Plasma Biomarker Candidates for the Prediction of eGFR Decline in Patients With Type 2 Diabetes.
Diabetes care, 1-8, https://doi.org/10.2337/dc18-0532, 2018.

Project

. Validation of systems biology derived molecular markers of renal donor organ status associated with long term allograft function.
Scientific reports, (8), 1, 6974, https://doi.org/10.1038/s41598-018-25163-8, 2018.

Project

. Endogenous factors and mechanisms of renoprotection and renal repair.
European journal of clinical investigation, (48), 5, e12914, https://doi.org/10.1111/eci.12914, 2018.

Project Project

. Proteomic-Biostatistic Integrated Approach for Finding the Underlying Molecular Determinants of Hypertension in Human Plasma.
Hypertension, (70), 2, 412–419, https://doi.org/10.1161/HYPERTENSIONAHA.116.08906, 2017.

Project

Projects

Projects

BEAt-DKD

Biomarker Enterprise to Attack Diabetic Kidney Disease

Renoprotection & Aging

Characterization of renoprotective and aging mechanisms

Octips

Ovarian Cancer Therapy – Innovative Models Prolong Survival

EU-MASCARA

Markers for Sub-Clinical Cardiovascular Risk Assessemnt

Dipromon

Multimodular biomarker analysis workflow for diagnosis, prognosis and monitoring of drug treatment response in bladder cancer

Drug positioning

Matching disease and drug MoA models

SysKid

Systems Biology of Kidney Disease

Omics analysis

Methods development for the analysis of high-throughput Omics datasets

TF prediction

Transcription factor prediction

omicsNET

omicsNET - construction of a protein dependency graph

Cancer mechanisms

Molecular characterization of cancer mechanisms

Cardiorenal syndrome

Molecular characterization of the cardiorenal syndrome

Synlet

Regulatory control networks of synthetic lethality

Ceondi

Ceondi

CKD phenotyping

Molecular phenotyping of CKD

E-Score

E-Score epitope prediction

TX phenotyping

Molecular phenotyping in renal transplantation

Rhesus genotyping

Genotyping of the rhesus locus

Teaching

Teaching

Medical Informatics Master Program @ the Technical University of Vienna

  • From Systems Biology to Systems Medicine (2015SS, VU, 2.0h, 3.0 ECTS)

  • From Systems Biology to Systems Medicine (2014SS, VU, 2.0h, 3.0 ECTS)

  • High-throughput Omics Experiments and Analysis (2013/14WS, VU, 2.0h, 3.0 ECTS)

  • From Systems Biology to Systems Medicine (2012SS, VU, 2.0h, 3.0 ECTS)

  • High-throughput Omics Experiments and Analysis (2011/12WS, VU, 2.0h, 3.0 ECTS)

Biomedical Engineering Bachelor Program @ the FH Technikum Vienna

  • Bioinformatics (2016/17WS, SE, 1.0h, 1.0 ECTS)